viterbi_serial.h File Reference

Functions
int	p7_Viterbi_general (ESL_DSQ *dsq, int L, P7_PROFILE *gm, float *opt_res)
int	p7_Viterbi_unilocal (ESL_DSQ *dsq, int L, P7_PROFILE *gm, float *opt_res)
int	p7_Viterbi_unilocal_word (ESL_DSQ *dsq, int L, P7_PROFILE *gm, float *opt_ret)

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Detailed Description

Serial implementation of Viterbi decoding

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Function Documentation

int p7_Viterbi_general	(	ESL_DSQ *	dsq,
		int	L,
		P7_PROFILE *	gm,
		float *	opt_res
	)

Viterbi Serial, for any alignment mode

int p7_Viterbi_unilocal	(	ESL_DSQ *	dsq,
		int	L,
		P7_PROFILE *	gm,
		float *	opt_res
	)

Viterbi Serial optimized for Unilocal alignments

int p7_Viterbi_unilocal_word	(	ESL_DSQ *	dsq,
		int	L,
		P7_PROFILE *	gm,
		float *	opt_ret
	)

Viterbi Serial optimized for Unilocal alignments and discretized with 16bit integers Emulates saturated arithmetic. Very slow.